Index

A

amplitude() (in module resurfemg.postprocessing.features)

area_under_baseline() (in module resurfemg.postprocessing.features)

B

baseline() (resurfemg.data_connector.data_classes.TimeSeries method) (resurfemg.data_connector.data_classes.TimeSeriesGroup method)

bell_curve() (in module resurfemg.helper_functions.math_operations)

C

calculate_time_products() (resurfemg.data_connector.data_classes.TimeSeries method) Channel (class in resurfemg.data_connector.tmsisdk_lite) close() (resurfemg.data_connector.tmsisdk_lite.Poly5Reader method) compute_power_loss() (in module resurfemg.preprocessing.filtering)

Config (class in resurfemg.data_connector.config) convert_to_os_path() (in module resurfemg.data_connector.config) create_config_from_example() (resurfemg.data_connector.config.Config method) csv_from_jkmn_to_array() (in module resurfemg.data_connector.converter_functions)

D

delay_embedding() (in module resurfemg.helper_functions.math_operations) derivative() (in module resurfemg.helper_functions.math_operations) detect_ecg_peaks() (in module resurfemg.preprocessing.ecg_removal) detect_emg_breaths() (in module resurfemg.postprocessing.event_detection) (resurfemg.data_connector.data_classes.TimeSeries method) detect_extreme_time_products() (in module resurfemg.postprocessing.quality_assessment)

detect_local_high_aub() (in module resurfemg.postprocessing.quality_assessment) detect_non_consecutive_manoeuvres() (in module resurfemg.postprocessing.quality_assessment) detect_on_offset() (resurfemg.data_connector.peakset_class.PeaksSet method) detect_ventilator_breath() (in module resurfemg.postprocessing.event_detection) dvrmn_csv_freq_find() (in module resurfemg.data_connector.converter_functions) dvrmn_csv_to_array() (in module resurfemg.data_connector.converter_functions)

E

ecg_removal_gating() (in module resurfemg.pipelines.processing) emg_bandpass_butter() (in module resurfemg.preprocessing.filtering) emg_highpass_butter() (in module resurfemg.preprocessing.filtering) emg_lowpass_butter() (in module resurfemg.preprocessing.filtering) EmgDataGroup (class in resurfemg.data_connector.data_classes)

envelope() (resurfemg.data_connector.data_classes.TimeSeries method) (resurfemg.data_connector.data_classes.TimeSeriesGroup method) evaluate_bell_curve_error() (in module resurfemg.postprocessing.quality_assessment) evaluate_event_timing() (in module resurfemg.postprocessing.quality_assessment) evaluate_respiratory_rates() (in module resurfemg.postprocessing.quality_assessment) evaluate_validity() (resurfemg.data_connector.peakset_class.PeaksSet method)

F

file_select() (in module resurfemg.pipelines.ipy_widgets) filter() (resurfemg.data_connector.data_classes.EmgDataGroup method) filter_emg() (resurfemg.data_connector.data_classes.TimeSeries method) find_files() (in module resurfemg.data_connector.file_discovery) find_folders() (in module resurfemg.data_connector.file_discovery) find_linked_peaks() (in module resurfemg.postprocessing.event_detection)

find_occluded_breaths() (in module resurfemg.postprocessing.event_detection) (resurfemg.data_connector.data_classes.VentilatorDataGroup method) find_peep() (resurfemg.data_connector.data_classes.VentilatorDataGroup method) find_repo_root() (in module resurfemg.data_connector.config) find_tidal_volume_peaks() (resurfemg.data_connector.data_classes.VentilatorDataGroup method) full_rolling_arv() (in module resurfemg.preprocessing.envelope) full_rolling_rms() (in module resurfemg.preprocessing.envelope)

G

gating() (in module resurfemg.preprocessing.ecg_removal) (resurfemg.data_connector.data_classes.EmgDataGroup method) (resurfemg.data_connector.data_classes.TimeSeries method)

get_directory() (resurfemg.data_connector.config.Config method) get_ecg_peaks() (resurfemg.data_connector.data_classes.TimeSeries method)

H

hash_it_up_right_all() (in module resurfemg.data_connector.config)

I

initialize_emg_tests() (in module resurfemg.helper_functions.data_classes_quality_assessment) initialize_linked_peaks_tests() (in module resurfemg.helper_functions.data_classes_quality_assessment) initialize_pocc_tests() (in module resurfemg.helper_functions.data_classes_quality_assessment)

interpeak_dist() (in module resurfemg.postprocessing.quality_assessment) intersections() (in module resurfemg.helper_functions.math_operations) intersects() (resurfemg.helper_functions.math_operations.Range method)

L

link_peak_set() (resurfemg.data_connector.data_classes.TimeSeries method) load() (resurfemg.data_connector.config.Config method) load_csv() (in module resurfemg.data_connector.converter_functions)

load_file() (in module resurfemg.data_connector.converter_functions) load_mat() (in module resurfemg.data_connector.converter_functions) load_npy() (in module resurfemg.data_connector.converter_functions) load_poly5() (in module resurfemg.data_connector.converter_functions)

M

main() (in module resurfemg.cli.cli) make_parser() (in module resurfemg.cli.cli) matlab5_jkmn_to_array() (in module resurfemg.data_connector.converter_functions) merge() (in module resurfemg.helper_functions.math_operations) module resurfemg resurfemg.cli resurfemg.cli.cli resurfemg.data_connector resurfemg.data_connector.config resurfemg.data_connector.converter_functions resurfemg.data_connector.data_classes resurfemg.data_connector.file_discovery resurfemg.data_connector.peakset_class resurfemg.data_connector.synthetic_data resurfemg.data_connector.tmsisdk_lite resurfemg.helper_functions resurfemg.helper_functions.data_classes_quality_assessment resurfemg.helper_functions.math_operations resurfemg.helper_functions.visualization resurfemg.pipelines resurfemg.pipelines.ipy_widgets resurfemg.pipelines.processing resurfemg.pipelines.synthetic_data resurfemg.postprocessing resurfemg.postprocessing.baseline resurfemg.postprocessing.event_detection resurfemg.postprocessing.features resurfemg.postprocessing.quality_assessment resurfemg.preprocessing resurfemg.preprocessing.ecg_removal resurfemg.preprocessing.envelope resurfemg.preprocessing.filtering

moving_baseline() (in module resurfemg.postprocessing.baseline)

N

naive_rolling_rms() (in module resurfemg.preprocessing.envelope)

notch_filter() (in module resurfemg.preprocessing.filtering)

O

onoffpeak_baseline_crossing() (in module resurfemg.postprocessing.event_detection)

onoffpeak_slope_extrapolation() (in module resurfemg.postprocessing.event_detection)

P

PeaksSet (class in resurfemg.data_connector.peakset_class) percentage_under_baseline() (in module resurfemg.postprocessing.quality_assessment) plot_aub() (resurfemg.data_connector.data_classes.TimeSeries method) plot_curve_fits() (resurfemg.data_connector.data_classes.TimeSeries method) plot_full() (resurfemg.data_connector.data_classes.TimeSeries method) (resurfemg.data_connector.data_classes.TimeSeriesGroup method) plot_markers() (resurfemg.data_connector.data_classes.TimeSeries method) (resurfemg.data_connector.data_classes.TimeSeriesGroup method)

plot_peaks() (resurfemg.data_connector.data_classes.TimeSeries method) (resurfemg.data_connector.data_classes.TimeSeriesGroup method) pocc_quality() (in module resurfemg.postprocessing.quality_assessment) Poly5Reader (class in resurfemg.data_connector.tmsisdk_lite) poly5unpad() (in module resurfemg.data_connector.converter_functions) poly_dvrman() (in module resurfemg.data_connector.converter_functions) precedes() (resurfemg.helper_functions.math_operations.Range method) pseudo_slope() (in module resurfemg.postprocessing.features)

Q

quick_look() (in module resurfemg.pipelines.processing)

R

Range (class in resurfemg.helper_functions.math_operations) ranges_of() (in module resurfemg.helper_functions.math_operations) raw_overlap_percent() (in module resurfemg.helper_functions.math_operations) read_data_MNE() (resurfemg.data_connector.tmsisdk_lite.Poly5Reader method) readSamples() (resurfemg.data_connector.tmsisdk_lite.Poly5Reader method) required_directories (resurfemg.data_connector.config.Config attribute) respiratory_pattern_generator() (in module resurfemg.data_connector.synthetic_data) respiratory_rate() (in module resurfemg.postprocessing.features) resurfemg module resurfemg.cli module resurfemg.cli.cli module resurfemg.data_connector module resurfemg.data_connector.config module resurfemg.data_connector.converter_functions module resurfemg.data_connector.data_classes module resurfemg.data_connector.file_discovery module resurfemg.data_connector.peakset_class module resurfemg.data_connector.synthetic_data module resurfemg.data_connector.tmsisdk_lite module resurfemg.helper_functions module

resurfemg.helper_functions.data_classes_quality_assessment module resurfemg.helper_functions.math_operations module resurfemg.helper_functions.visualization module resurfemg.pipelines module resurfemg.pipelines.ipy_widgets module resurfemg.pipelines.processing module resurfemg.pipelines.synthetic_data module resurfemg.postprocessing module resurfemg.postprocessing.baseline module resurfemg.postprocessing.event_detection module resurfemg.postprocessing.features module resurfemg.postprocessing.quality_assessment module resurfemg.preprocessing module resurfemg.preprocessing.ecg_removal module resurfemg.preprocessing.envelope module resurfemg.preprocessing.filtering module running_smoother() (in module resurfemg.helper_functions.math_operations)

S

sanitize() (resurfemg.data_connector.peakset_class.PeaksSet method) save_preprocessed() (in module resurfemg.helper_functions.math_operations) scale_arrays() (in module resurfemg.helper_functions.math_operations) set_common_args() (in module resurfemg.cli.cli) set_peaks() (resurfemg.data_connector.data_classes.TimeSeries method) show_periodogram() (in module resurfemg.helper_functions.visualization) show_power_spectrum() (in module resurfemg.helper_functions.visualization) show_psd_welch() (in module resurfemg.helper_functions.visualization) signal_type_data() (resurfemg.data_connector.data_classes.TimeSeries method) simulate_emg() (in module resurfemg.data_connector.synthetic_data)

simulate_muscle_dynamics() (in module resurfemg.data_connector.synthetic_data) simulate_raw_emg() (in module resurfemg.pipelines.synthetic_data) simulate_ventilator_data() (in module resurfemg.data_connector.synthetic_data) (in module resurfemg.pipelines.synthetic_data) slices_jump_slider() (in module resurfemg.helper_functions.math_operations) slices_slider() (in module resurfemg.helper_functions.math_operations) slopesum_baseline() (in module resurfemg.postprocessing.baseline) snr_pseudo() (in module resurfemg.postprocessing.quality_assessment) synthetic_emg_cli() (in module resurfemg.pipelines.synthetic_data) synthetic_ventilator_data_cli() (in module resurfemg.pipelines.synthetic_data)

T

test_aub() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_consecutive_poccs() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_curve_fits() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_emg_quality() (resurfemg.data_connector.data_classes.TimeSeries method) test_event_timing() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_fraction_detected_breaths() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_interpeak_distance() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_linked_peak_sets() (resurfemg.data_connector.data_classes.TimeSeries method) test_pocc_quality() (resurfemg.data_connector.data_classes.TimeSeries method)

test_pocc_upslope() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_relative_aub() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_relative_etp() (in module resurfemg.helper_functions.data_classes_quality_assessment) test_snr() (in module resurfemg.helper_functions.data_classes_quality_assessment) time_product() (in module resurfemg.postprocessing.features) time_to_peak() (in module resurfemg.postprocessing.features) TimeSeries (class in resurfemg.data_connector.data_classes) TimeSeriesGroup (class in resurfemg.data_connector.data_classes) to_slice() (resurfemg.helper_functions.math_operations.Range method)

U

update_test_outcomes() (resurfemg.data_connector.peakset_class.PeaksSet method)

usage() (resurfemg.data_connector.config.Config method)

V

validate() (resurfemg.data_connector.config.Config method)

VentilatorDataGroup (class in resurfemg.data_connector.data_classes)

W

wavelet_denoising() (in module resurfemg.preprocessing.ecg_removal) (resurfemg.data_connector.data_classes.EmgDataGroup method) (resurfemg.data_connector.data_classes.TimeSeries method)

Z

zero_one_for_jumps_base() (in module resurfemg.helper_functions.math_operations)